August 10, 2021 preprint - data availability

2022-05-17

Introduction

This folder contains data from the manuscript "Shedding of Infectious SARS-CoV-2 Despite Vaccination when the Delta Variant is Prevalent - Wisconsin, July 2021."

These data are from the updated submission submitted to Medrxiv on August 10, 2021. The key changes in this revision are:

  • Inclusion of more individuals dating to 31 July 2021
  • Addition of verified vaccine statuses of some samples from official public health registries
  • Addition of virus culture data from samples with a PCR Ct < 25
  • Addition of information on testing timing
  • Removal of Pango lineages and GISAID identifiers since we are now using an expanded dataset where delta was even more prevalent in Wisconsin

Data

Updated 16 August 2021 to include virus culture information

  • Ct values, vaccine status, and symptom presence for specimens described in manuscript [link]

Workflow

Updated 16 August 2021 to include virus culture information

  • R code used to generate manuscript figures [link]